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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6053764_6054398_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6053764 - 6054398
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAAGCT
5'SS Class:
major
3'SS Sequence:
CCCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CCAATATTCATT
Flanking Amino Acid:
SWTGKPPICLADIRPSGRPV
Intron Amino Acid Position:
3332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
66.2
37.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
32.9
-1.9
3.5
49
46.7
Minor BPS
42.5
-0.5
1.9
53.63
42.2

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464