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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6054465_6055033_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6054465 - 6055033

Intron Length:

569

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CTGTGGTTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTGT

U12 Branch Point Sequence:

TTTGCTGTGGTT

Flanking Amino Acid:

ARDPPLAKVSVPADVFARNS

Intron Amino Acid Position:

3354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.6

32.3

Major BPS

32.2

-1.1

4.2

57.4

49.1

Major PPT

70.6

0.46

61.5

44.5

Minor 5ss

33.3

-1.9

3.5

48.8

47.4

Minor BPS

36.9

-0.9

3.7

69.68

42.6

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464