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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6055196_6055689_F

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6055196 - 6055689
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GATCTCATGATT
Flanking Amino Acid:
DHSGVELQVSGIYKKEDVHL
Intron Amino Acid Position:
3408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.1
0.57
1
65.4
45
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
49.7
0.06
1.6
66.93
37.4

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464