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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6056636_6057840_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6056636 - 6057840

Intron Length:

1205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAACCTTC

5'SS Class:

weak_major

3'SS Sequence:

TGCTGTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

GTGTTTTGAAAT

Flanking Amino Acid:

GFGQFGLQRLDISMMENDPE

Intron Amino Acid Position:

3475

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

1.2

64.1

43.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

76.1

0.59

72.5

42.4

Minor 5ss

62.3

0.42

2.4

68.1

43.1

Minor BPS

55.1

0.24

1.5

70.39

40.5

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464