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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6057980_6058544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6057980 - 6058544

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TGGCTTTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGGAT

U12 Branch Point Sequence:

CCTCTCTGGATT

Flanking Amino Acid:

AGFVLYLYKHRRRPKVPFNG

Intron Amino Acid Position:

3521

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

82.3

32.2

Major BPS

58.9

0.22

1.5

59.3

47.1

Major PPT

74.7

0.56

0.9

69.8

36.6

Minor 5ss

43.4

-0.7

3.1

60.6

44.5

Minor BPS

49.8

0.07

1.5

64.22

40.8

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464