About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_60704_66872_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60704 - 66872
Intron Length:
6169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTGCTTTAAAT
Flanking Amino Acid:
QLQTANVYCSWELTLFWSKL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.4
0.5
0.9
65.5
40
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
68.4
0.66
1.5
80.63
41.5

Associated Gene:

Gene:
RLF
Ensembl Gene ID:
ENSAPLG00000011786
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012274
23045 - 74585
51541