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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6100106_6100263_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6100106 - 6100263
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CACCCCTGACCC
Flanking Amino Acid:
ESGEPGPKGQQGIQGELGFP
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
72.3
0.5
0.8
65.4
29.9
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
47.4
-0.2
1.8
53.81
43.6

Associated Gene:

Gene:
COL9A2
Ensembl Gene ID:
ENSAPLG00000003493
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031555
6098121 - 6106859
8739
ENSAPLT00000022759
6098121 - 6106859
8739
ENSAPLT00000003617
6098121 - 6106859
8739