About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6100615_6100722_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6100615 - 6100722
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGGCT
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CACCCCTCAGCT
Flanking Amino Acid:
QGLPGVKGDKGSPGKTGPKG
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.5
39.1
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
32
-2.1
3.6
47.6
48
Minor BPS
48.4
-0
1.8
63.11
46.4

Associated Gene:

Gene:
COL9A2
Ensembl Gene ID:
ENSAPLG00000003493
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031555
6098121 - 6106859
8739
ENSAPLT00000022759
6098121 - 6106859
8739
ENSAPLT00000003617
6098121 - 6106859
8739