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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6101415_6101711_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6101415 - 6101711

Intron Length:

297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTAAT

U12 Branch Point Sequence:

ACCCCCCTAATC

Flanking Amino Acid:

PGITGAPGQLGEPGPRGEQG

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.8

35.2

Major BPS

69.6

0.49

1.1

69.5

Major PPT

89.8

0.9

0.6

89.2

19.6

Minor 5ss

29.8

-2.3

2.6

30.5

37.5

Minor BPS

0.04

1.7

58.8

40.4

Associated Gene:

Gene:

COL9A2

Ensembl Gene ID:

ENSAPLG00000003493

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031555

6098121 - 6106859

8739

ENSAPLT00000022759

6098121 - 6106859

8739

ENSAPLT00000003617

6098121 - 6106859

8739