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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6102103_6102300_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6102103 - 6102300
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
TGGTGGTGACAT
Flanking Amino Acid:
DGTPGIPGVKGSAGQPGRPG
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
71.5
0.48
0.7
65.1
23.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
36.1
-0.9
2.5
54.5
46.7

Associated Gene:

Gene:
COL9A2
Ensembl Gene ID:
ENSAPLG00000003493
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031555
6098121 - 6106859
8739
ENSAPLT00000022759
6098121 - 6106859
8739
ENSAPLT00000003617
6098121 - 6106859
8739