Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6102946_6103091_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6102946 - 6103091

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGCGCC

5'SS Class:

major

3'SS Sequence:

GCTCTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGGAAT

U12 Branch Point Sequence:

CTGGGAGGAATC

Flanking Amino Acid:

PGMAGPKGETGPAGYKGMVG

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

65.5

Major BPS

43.6

-0.4

1.5

47.4

44.6

Major PPT

82.4

0.73

0.8

76.3

32.2

Minor 5ss

38.1

-1.3

3.3

52.1

44.7

Minor BPS

32.5

-1.3

2.3

39.3

40.4

Associated Gene:

Gene:

COL9A2

Ensembl Gene ID:

ENSAPLG00000003493

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031555

6098121 - 6106859

8739

ENSAPLT00000022759

6098121 - 6106859

8739

ENSAPLT00000003617

6098121 - 6106859

8739