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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6124963_6130060_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6124963 - 6130060

Intron Length:

5098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

TATCTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATCT

Flanking Amino Acid:

MNGMNFRPRWASWNIG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

39.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.3

0.82

0.7

80.9

30.6

Minor 5ss

38.1

-1.3

3.1

55.9

42.3

Minor BPS

74.5

0.85

1.5

91.05

32.7

Associated Gene:

Gene:

SMAP2

Ensembl Gene ID:

ENSAPLG00000003192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020321

6124944 - 6133729

8786

ENSAPLT00000003263

6124944 - 6134567

9624