Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6132134_6132564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6132134 - 6132564

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCATCAC

U12 Branch Point Sequence:

CCGTCCATCACA

Flanking Amino Acid:

SEPVMDLLGLDAPVTSTLTN

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.7

34.5

Major BPS

53.4

0.09

1.1

57.3

37.7

Major PPT

83.8

0.76

0.7

76.7

Minor 5ss

31.8

-2.1

3.3

40.1

39.9

Minor BPS

48.7

-0.1

2.1

59.58

46.3

Associated Gene:

Gene:

SMAP2

Ensembl Gene ID:

ENSAPLG00000003192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020321

6124944 - 6133729

8786

ENSAPLT00000003263

6124944 - 6134567

9624