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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6133535_6134437_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6133535 - 6134437
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TAGCCCTGACTT
Flanking Amino Acid:
AQQLQWNITQMTQQMAGMNF
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78.7
0.65
0.7
72.6
25.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
50
0.08
1.8
67.64
43.1

Associated Gene:

Gene:
SMAP2
Ensembl Gene ID:
ENSAPLG00000003192
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003263
6124944 - 6134567
9624