Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6143347_6143450_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6143347 - 6143450

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATGTCC

5'SS Class:

major

3'SS Sequence:

CTCTGCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GCCCCACTAACC

Flanking Amino Acid:

EESPQGKVLQVIVWGDYGRM

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

65.4

34.8

Major BPS

64.5

0.36

65.2

28.2

Major PPT

71.8

0.49

0.8

64.6

Minor 5ss

32.6

-2

3.2

42.3

44.6

Minor BPS

46.4

-0.2

1.9

54.91

42.6

Associated Gene:

Gene:

RIMS3

Ensembl Gene ID:

ENSAPLG00000003119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003160

6143134 - 6146488

3355