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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6144894_6145004_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6144894 - 6145004
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGACC
5'SS Class:
major
3'SS Sequence:
CCGTCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAC
U12 Branch Point Sequence:
CCGTCCCACACA
Flanking Amino Acid:
GSTNSNSSDGTFIFPTTRLG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
70.5
40.1
Major BPS
47.8
-0.1
1.4
58.1
40.4
Major PPT
64
0.32
0.9
57.3
32.4
Minor 5ss
34.9
-1.7
3.1
43.8
36.7
Minor BPS
42
-0.6
2.3
51
46.7

Associated Gene:

Gene:
RIMS3
Ensembl Gene ID:
ENSAPLG00000003119
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003160
6143134 - 6146488
3355