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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6145147_6146268_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6145147 - 6146268
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TCTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCATGCTCACCC
Flanking Amino Acid:
SKSTLQLNQSEGGPKKLRSN
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.6
0.73
0.8
76.5
32.1
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
43.3
-0.5
2.2
50.78
46

Associated Gene:

Gene:
RIMS3
Ensembl Gene ID:
ENSAPLG00000003119
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003160
6143134 - 6146488
3355