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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6171203_6174534_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6171203 - 6174534

Intron Length:

3332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

AGTCTCTCAAAT

Flanking Amino Acid:

VMEEIRNLTVKDFRVQELPL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

81.4

30.6

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

77.3

0.61

0.9

70.5

35.2

Minor 5ss

37.4

-1.4

3.3

49.4

41.4

Minor BPS

53.4

0.19

1.6

70.54

39.5

Associated Gene:

Gene:

NFYC

Ensembl Gene ID:

ENSAPLG00000002519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028300

6171098 - 6188730

17633

ENSAPLT00000002552

6171098 - 6188730

17633