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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6174607_6178485_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6174607 - 6178485

Intron Length:

3879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAATCG

5'SS Class:

major

3'SS Sequence:

TTTGTTGTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TAAAGCTGAAGA

Flanking Amino Acid:

KIMKLDEDVKRNDIAMAITK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

59.5

40.3

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

80.6

0.69

0.9

73.5

41.9

Minor 5ss

36.5

-1.5

3.3

48.4

47.3

Minor BPS

44.5

-0.4

2.1

55.38

42.8

Associated Gene:

Gene:

NFYC

Ensembl Gene ID:

ENSAPLG00000002519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028300

6171098 - 6188730

17633