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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6176274_6178485_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6176274 - 6178485

Intron Length:

2212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGAG

5'SS Class:

major

3'SS Sequence:

TTTGTTGTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TAAAGCTGAAGA

Flanking Amino Acid:

TEDNKRRTLQRNDIAMAITK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.2

40.1

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

80.6

0.69

0.9

73.5

41.9

Minor 5ss

35.3

-1.7

3.4

46.6

48.7

Minor BPS

44.5

-0.4

2.1

55.38

42.8

Associated Gene:

Gene:

NFYC

Ensembl Gene ID:

ENSAPLG00000002519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033459

6170758 - 6188730

17973

ENSAPLT00000020590

6171098 - 6188730

17633

ENSAPLT00000002552

6171098 - 6188730

17633