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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6178582_6182501_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6178582 - 6182501
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAC
U12 Branch Point Sequence:
TCCCCGTTCACC
Flanking Amino Acid:
RDELKPPKRQEEVRQAVTPA
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
71.2
0.48
0.9
64.3
36.7
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
46.3
-0.3
2.4
59.26
46

Associated Gene:

Gene:
NFYC
Ensembl Gene ID:
ENSAPLG00000002519
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028300
6171098 - 6188730
17633
ENSAPLT00000020590
6171098 - 6188730
17633
ENSAPLT00000002552
6171098 - 6188730
17633
ENSAPLT00000033459
6170758 - 6188730
17973