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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6182676_6183425_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6182676 - 6183425
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAACG
Flanking Amino Acid:
IIIAQPQQGQTTPVTMQVGE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.3
0.34
1
59
40.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
61.8
0.23
1.6
63.52
44.5

Associated Gene:

Gene:
NFYC
Ensembl Gene ID:
ENSAPLG00000002519
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020590
6171098 - 6188730
17633
ENSAPLT00000002552
6171098 - 6188730
17633
ENSAPLT00000033459
6170758 - 6188730
17973
ENSAPLT00000028300
6171098 - 6188730
17633