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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6188076_6188610_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6188076 - 6188610
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
GTGATGAGAACT
Flanking Amino Acid:
QQFSQFTDGQQLYQIQQVTM
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
69.5
0.44
0.9
62.2
34.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
40.5
-0.6
2.2
59.08
43.6

Associated Gene:

Gene:
NFYC
Ensembl Gene ID:
ENSAPLG00000002519
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033459
6170758 - 6188730
17973
ENSAPLT00000028300
6171098 - 6188730
17633
ENSAPLT00000020590
6171098 - 6188730
17633
ENSAPLT00000002552
6171098 - 6188730
17633