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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6238019_6238111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6238019 - 6238111

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCTC

U12 Branch Point Sequence:

CCCCCCTGTTCT

Flanking Amino Acid:

RGPAGPKGLQGEPGEQGIGQ

Intron Amino Acid Position:

932

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

29.7

-1.2

4.2

63.1

44.5

Major PPT

78.4

0.64

0.8

73.8

31.3

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

34.2

-1.1

3.5

53.86

47.2

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734