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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6238397_6238500_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6238397 - 6238500
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CCTTAATCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TGCTCCTTAATC
Flanking Amino Acid:
RGPAGPKGEKGDSCEPCPVL
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
72.3
0.5
0.9
65.7
34.6
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
80
0.92
1.1
79.01
36.6

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734