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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6238956_6239036_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6238956 - 6239036

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TCCCCCCCCACA

Flanking Amino Acid:

PGVQGLKGEKGEPCGQCPPA

Intron Amino Acid Position:

750

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

74.9

35.3

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

71.3

0.48

0.7

64.4

24.2

Minor 5ss

33.5

-1.9

3.4

47.6

Minor BPS

42.4

-0.6

2.2

53.63

44.5

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734