Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6239391_6239511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6239391 - 6239511

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GACCTTTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

GGAGCTGTGACC

Flanking Amino Acid:

GHEGEPAPLLGATILPGLAG

Intron Amino Acid Position:

705

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.5

29.5

Major BPS

0.22

1.2

52.4

43.3

Major PPT

71.1

0.47

0.9

35.9

Minor 5ss

35.2

-1.7

2.8

38.4

40.8

Minor BPS

44.5

-0.4

2.1

51.42

39.9

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734