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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6239605_6239723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6239605 - 6239723

Intron Length:

119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

GCGCCCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCGAT

U12 Branch Point Sequence:

AGCCCCCCGATT

Flanking Amino Acid:

PGIHGMKGEKGDSCLSCDAR

Intron Amino Acid Position:

674

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.7

84.8

25.1

Major BPS

47.5

-0.1

1.3

43.7

39.4

Major PPT

65.1

0.34

0.9

57.4

33.2

Minor 5ss

31.8

-2.1

3.3

42.9

44.7

Minor BPS

43.8

-0.4

1.8

56.95

39.4

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734