Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6239760_6239839_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6239760 - 6239839

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

CCTTCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCAAC

U12 Branch Point Sequence:

CAACCCCAAACC

Flanking Amino Acid:

PGPAGPKGDRGDPGIHGMKG

Intron Amino Acid Position:

662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

64.7

Major BPS

49.7

-0

1.3

58.6

35.9

Major PPT

77.2

0.61

0.7

68.9

31.5

Minor 5ss

31.2

-2.1

3.4

34.3

Minor BPS

-0.3

54.92

42.5

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734