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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6239876_6239957_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6239876 - 6239957

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAA

U12 Branch Point Sequence:

CATCCCTAAAGC

Flanking Amino Acid:

PGLPGKDGVSDRPGPAGPKG

Intron Amino Acid Position:

650

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

69.1

43.2

Major BPS

60.4

0.26

1.1

61.5

32.5

Major PPT

71.1

0.47

0.8

64.8

30.8

Minor 5ss

32.9

-2

42.1

44.4

Minor BPS

49.4

-0

60.72

44.3

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734