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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6240066_6240199_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6240066 - 6240199

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TTGTCCCTCACC

Flanking Amino Acid:

PGGLGPKGAKGEPCEPCPTG

Intron Amino Acid Position:

614

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.1

34.7

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

68.3

0.41

0.9

64.4

Minor 5ss

26.1

-2.7

3.2

42.6

Minor BPS

58.7

0.26

2.1

75.12

41.7

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734