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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6241012_6241102_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6241012 - 6241102
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CCCTTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
CCCTTCCCACCA
Flanking Amino Acid:
QGKPGRPGRDGRPGEICVVG
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.3
36.2
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
70
0.45
0.9
62.6
33.2
Minor 5ss
33.1
-1.9
2.8
41.4
38.2
Minor BPS
40.7
-0.7
2
46.95
43.3

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734