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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6241350_6241456_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6241350 - 6241456
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTCCCTCTGACG
Flanking Amino Acid:
QGEKGQRGEAGLPGAVGADG
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
64.3
0.32
0.9
57.9
31.7
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
48
-0.3
1.7
53.6
41.3

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734