Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6241502_6241606_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6241502 - 6241606

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

ACCCCCTCACCA

Flanking Amino Acid:

VRTDPGGPVQCAEGPQGEKG

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

68.6

36.5

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

80.7

0.69

0.7

31.8

Minor 5ss

27.8

-2.5

2.9

34.2

41.4

Minor BPS

47.5

-0.1

1.8

55.28

43.5

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734