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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6241831_6241982_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6241831 - 6241982

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAC

U12 Branch Point Sequence:

CACACCTCACCA

Flanking Amino Acid:

NVTLGPPGPKGGKGERGLPG

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

63.6

0.34

65.3

32.1

Major PPT

85.9

0.81

0.7

80.4

24.8

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

46.5

-0.2

1.9

53.37

44.7

Associated Gene:

Gene:

COL16A1

Ensembl Gene ID:

ENSAPLG00000024730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021875

6237728 - 6249461

11734