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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6242218_6242500_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6242218 - 6242500
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCGTGTTCATCT
Flanking Amino Acid:
RGPPGTRSEECPPCSPRTSP
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.4
0.75
0.8
81
30.8
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
42.1
-0.5
2.1
54.92
47.4

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734