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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6243394_6243601_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6243394 - 6243601
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGACCCCTATTT
Flanking Amino Acid:
EGCCEISASGCQPEAPKTRR
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
48.6
-0
1.9
68.33
42.1

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734