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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6246194_6248280_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6246194 - 6248280
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
CCGGTGTGACCC
Flanking Amino Acid:
CQGKEPPQAEGELCPQLWDE
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
80.8
0.69
0.9
73.7
36.9
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
35.4
-1.1
2.1
37.22
41.3

Associated Gene:

Gene:
COL16A1
Ensembl Gene ID:
ENSAPLG00000024730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021875
6237728 - 6249461
11734