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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6257696_6257819_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6257696 - 6257819
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
CCGGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CGACCCCTGACA
Flanking Amino Acid:
TRTKGYGTASYCWLSLEGGL
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
53.7
43.7
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
65
0.34
0.9
57.7
33.3
Minor 5ss
32.9
-2
3.4
41
40.9
Minor BPS
49.7
-0
1.7
58.71
40.3

Associated Gene:

Gene:
ADGRB2
Ensembl Gene ID:
ENSAPLG00000029913
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039700
6252854 - 6266811
13958
ENSAPLT00000019126
6252854 - 6266811
13958
ENSAPLT00000045118
6252854 - 6266811
13958