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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6260742_6260818_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6260742 - 6260818
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
ATCCCTGTGACA
Flanking Amino Acid:
RTLGLILPPPRAPLAVTSKV
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.4
-0.1
2
61.61
38.7

Associated Gene:

Gene:
ADGRB2
Ensembl Gene ID:
ENSAPLG00000029913
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045118
6252854 - 6266811
13958
ENSAPLT00000039700
6252854 - 6266811
13958
ENSAPLT00000019126
6252854 - 6266811
13958