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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6262907_6262977_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6262907 - 6262977
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCGCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGCCCCTGACCC
Flanking Amino Acid:
VKTCNEKKCPAYHEMCKDEY
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.5
0.49
0.8
61.9
34.8
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
50
-0
1.8
61.68
43.2

Associated Gene:

Gene:
ADGRB2
Ensembl Gene ID:
ENSAPLG00000029913
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039700
6252854 - 6266811
13958
ENSAPLT00000019126
6252854 - 6266811
13958
ENSAPLT00000045118
6252854 - 6266811
13958