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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6344991_6347043_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6344991 - 6347043
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTTCCTTAAAT
Flanking Amino Acid:
VAVHCVAGLGRAPVLVALAL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.1
0.77
0.7
82.8
28.4
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
84.3
1.15
1.2
93.4
34.6

Associated Gene:

Gene:
PTP4A2
Ensembl Gene ID:
ENSAPLG00000030704
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021653
6343675 - 6353385
9711