Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6380885_6381190_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6380885 - 6381190

Intron Length:

306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

ATTACTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAC

U12 Branch Point Sequence:

CTGTATGTAACC

Flanking Amino Acid:

GYEGYYSQGQGDTEYYDYGH

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

72.3

39.5

Major BPS

0.42

1.1

38.5

Major PPT

79.8

0.67

0.9

70.3

40.5

Minor 5ss

34.1

-1.8

2.9

36.4

40.6

Minor BPS

48.4

-0.1

2.2

62.47

43.4

Associated Gene:

Gene:

KHDRBS1

Ensembl Gene ID:

ENSAPLG00000006587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037905

6368804 - 6383745

14942

ENSAPLT00000006859

6319321 - 6383649

64329