About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6394036_6394692_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6394036 - 6394692
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
CTCCCCTCAGCC
Flanking Amino Acid:
RRLIVAIVKEASQSGKVSLP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.5
39
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
43.5
-0.7
3.1
60
44.7
Minor BPS
49.2
-0
1.9
60.11
44.8

Associated Gene:

Gene:
TMEM39B
Ensembl Gene ID:
ENSAPLG00000006828
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007098
6391913 - 6397790
5878