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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6418748_6419120_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6418748 - 6419120
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TCTTCCCTATTT
Flanking Amino Acid:
KAKEEKPEPKGVKEETKST*
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
34.6
-1.7
3.1
40.8
45
Minor BPS
59.6
0.38
2
80.43
41.9

Associated Gene:

Gene:
HDAC1
Ensembl Gene ID:
ENSAPLG00000014752
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037567
6417885 - 6427521
9637
ENSAPLT00000015434
6418675 - 6427521
8847
ENSAPLT00000044203
6417335 - 6427521
10187