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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6419417_6420182_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6419417 - 6420182
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGCACT
5'SS Class:
major
3'SS Sequence:
TTCACGTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTCTGCTGAAAC
Flanking Amino Acid:
EEEDPEKRISIRNSDKRISC
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.1
41.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
75.4
0.57
0.9
72.4
37.5
Minor 5ss
42.3
-0.8
3.2
58.5
40.2
Minor BPS
48.3
-0.1
2
60.18
44.8

Associated Gene:

Gene:
HDAC1
Ensembl Gene ID:
ENSAPLG00000014752
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037567
6417885 - 6427521
9637
ENSAPLT00000015434
6418675 - 6427521
8847
ENSAPLT00000044203
6417335 - 6427521
10187