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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6420528_6421013_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6420528 - 6421013
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATAATT
5'SS Class:
major
3'SS Sequence:
AACTTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTATTTTAACT
Flanking Amino Acid:
AVALDTEIPNELPYNDYFEY
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
77.8
36.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.8
0.6
0.9
70.2
35.4
Minor 5ss
40
-1.1
3.2
59.6
44.6
Minor BPS
73.9
0.83
1.2
83.78
37.4

Associated Gene:

Gene:
HDAC1
Ensembl Gene ID:
ENSAPLG00000014752
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037567
6417885 - 6427521
9637
ENSAPLT00000015434
6418675 - 6427521
8847
ENSAPLT00000044203
6417335 - 6427521
10187