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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6421155_6421328_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6421155 - 6421328
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATGAA
U12 Branch Point Sequence:
TTTTTCCCCACT
Flanking Amino Acid:
RLGCFNLTIKGHAKCVEFVK
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
62.9
0.32
1.1
53.9
41.5
Major PPT
75.8
0.58
0.9
72.6
37.7
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
49.3
0.03
2.3
80.59
41.2

Associated Gene:

Gene:
HDAC1
Ensembl Gene ID:
ENSAPLG00000014752
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037567
6417885 - 6427521
9637
ENSAPLT00000015434
6418675 - 6427521
8847
ENSAPLT00000044203
6417335 - 6427521
10187