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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6421834_6422436_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6421834 - 6422436
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
CTCTCTTTAACA
Flanking Amino Acid:
EYFPGTGDLRDIGAGKGKYY
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.1
40.8
Major BPS
70
0.5
1
59.6
38.6
Major PPT
79.8
0.67
0.8
76.2
31
Minor 5ss
27.9
-2.5
2.7
24.8
36.2
Minor BPS
78.2
0.88
1.2
78.6
38.6

Associated Gene:

Gene:
HDAC1
Ensembl Gene ID:
ENSAPLG00000014752
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044203
6417335 - 6427521
10187
ENSAPLT00000037567
6417885 - 6427521
9637
ENSAPLT00000015434
6418675 - 6427521
8847