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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6423311_6424428_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6423311 - 6424428

Intron Length:

1118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTTCTCCCAACA

Flanking Amino Acid:

FCQLSAGGSVASAVKLNKQQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

71.5

41.1

Major BPS

84.4

0.85

1.1

34.5

Major PPT

0.56

0.8

70.2

29.3

Minor 5ss

47.6

-0.2

2.8

61.4

44.4

Minor BPS

49.1

-0

1.9

65.62

40.5

Associated Gene:

Gene:

HDAC1

Ensembl Gene ID:

ENSAPLG00000014752

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044203

6417335 - 6427521

10187

ENSAPLT00000037567

6417885 - 6427521

9637

ENSAPLT00000015434

6418675 - 6427521

8847